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The report contains several parts, please see the following plot to get
more detail about the report
Summary
Unique Genes: 650
Unique
Isoforms: 3925
Splice Junction Classification
Gene Characterization
Transcript Length
Normalized Classification
Quantification
Gene Expression, Annotated vs Novel
Number of FL reads per Gene by type of gene annotation
Splice Junction Characterization
Distribution
Distribution of Splice Junctions by Structural Classification
Distribution of Transcripts by Splice Junctions
RT−Switching
RT−Switching All Junctions
Unique Junctions RT−switching
Comparison With Annotated TSS and
TTS
Distance to Annotated
Polyadenylation Site
Distance to Annotated
Transcription Start Site
Comparison With Annotated TSS and TTS by
Subcategories
Distance to Annotated
Polyadenylation Site
Alternative 3’End for FSM
Alternative 3’5’End for FSM
Alternative 5’End for FSM
Alternative 3’End for ISM
Alternative 3’5’End for ISM
Alternative 5’End for ISM
Distance to Annotated
Transcription Start Site
Alternative 3’End for FSM
Alternative 3’5’End for FSM
Alternative 5’End for FSM
Alternative 3’End for ISM
Alternative 3’5’End for ISM
Alternative 5’End for ISM
PolyA Distance Analysis
PolyA Distance Analysis by categories
PolyA Distance Analysis by categories (table)
PolyA Distance Analysis by subcategories
PolyA Distance Analysis by subcategories (table)
Multi-exonic FSM
Subcat: Alternative 3’ End
Subcat: Alternative 3’5’ End
Subcat: Alternative 5’ End
Multi-exonic ISM
Subcat: Internal Fragment
Multi-exonic NIC
Subcat: Combination of Annotated Junctions
Subcat: Combination of Annotated Splice Sites
Multi-exonic NNC
Subcat: Combination of Annotated Junctions
Subcat: Combination of Annotated Splice Sites
Subcat: Mono-Exon by Intron Retention
Subcat: At Least One Annotated Donor/Acceptor
Redundancy Analysis
Only FSM
FSM with a polyA motif found
Only ISM
ISM with a polyA motif found
FSM and ISM
FSM and ISM with a polyA motif found
Intra-Priming Quality Check
Features of Bad Quality
Quality Control
Attributes Across Structural Categories
Quality Control Attributes Across Structural Categories
Splice Junctions Without Short Read Coverage
Features of Good Quality
TSS and TTS Support
Percentages
Attributes
Good Quality Control Attributes